Monday, October 17, 2011

Biotech: Vector Cloning vs PCR, DNA Sequencing

Vector Cloning, PCR (Polymerase Chain Reaction), & DNA Sequencing

The two methods of artifical DNA replication, or "cloning", have similarites as follows:
- They both intend to produce large numbers of the gene they replicate
- They both are executed with the intent of replicating a gene elsewhere.

Differences:

Vector Cloning:
- Is done with the intention of further expressing the gene
- Uses the restriction enzymes to determine the gene of interest, then inserted into the plasmid.
File:Plasmid (english).svg
Figure 1.1: Plasmids in Bacteria
- Plasmid is then introduced to bacteria. The plasmid has the opportunity to reproduce along with the bacteria.
- The gene of interest, when done correctly, is expressed in the given object.

This differs from PCR because:

- PCR requires a PCR machine
- PCR has no intention of expressing the gene, in fact, PCR may not even be a gene that it targets
- PCR hs hydrogen bonds broken with heat
- DNA primers are then introduced, unlike DNA replication, where RNA primers are introduced. The DNA primer is man-made.
File:PCR.svg
Figure 1.2: PCR Process
- Taq polymerase is introduced after the primers anneal (instead of DNA poly III) because of the level of heat the DNA is subjected to.
- The growth of DNA with PCR is exponential.
- Stops with cooling process

DNA Sequencing

-DNA Sequencing requires radioactive primers, in order for them to be visible to the naked eye,unlike PCR
-The signal to stop in DNA Sequencing is always a ddNTP - they lack an OH to add on to the next nucleotide
- When incomplete digestion is wanted, only a small amount of ddNTP is added, thus not creating enough termination signals.

<- A short & sweet video to help reinforce your knowledge of DNA Sequencing :)

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